Basic Usage 
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Workflow
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.. image:: ./../_static/4D-BioReconX_workflow_v1.0.0.jpg
    :alt: Title figure
    :width: 700px
    :align: center

Usage
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Follow the instructions for each module of interest 


4D-BioReconX
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**4D-BioReconX** is a scalable and versatile framework designed to construct a comprehensive four-dimensional (4D) spatial transcriptomics atlas of whole animals at single-cell resolution. This approach enables us to track the intricate spatiotemporal dependencies of morphogenetic gradients and regenerative patterning. It runs based on spatial transcriptomics data, such as Stereo-seq (spatial enhanced resolution omics sequencing) data. Notably, we are still working on the improvement of performance and calculation efficiency.