Polarity analysis

This section contains main analyses on polarity-related genes to capture positional gradients along the body axis.

• Gradient Gene Profiling
  • Usage
• Spatial pattern Clustering
  • Usage
    • Load data in anndata format
    • First round of clustering using hdbscan
    • Second round of “clustering”
    • Save results
    • Visualization by heatmap
• Gradient correlation
  • Calculating Spearman’s rank correlation coefficient
  • Finding out more polarity-related genes
• PCG PCA
  • usage
  • example