TutorialsΒΆ
This section consists of various cases which will make you familiar with the process of main analyses.
This section contains a Whole-Animal reconstruction pipeline using 2D multimodal registration, Cell segmentation, Clustering, and Annotation to integrate the series of Stereo-seq slices and obtain comprehensive 3D anatomic and molecular profiles.
This section contains a pipeline for spatial proximity-based clustering (SPC) to group similar cells into the same cluster based on both transcriptional similarity and spatial proximity, as well as downstream analyses.
This section contains main analyses on polarity-related genes to capture positional gradients along the body axis.
This section introduces various methods to meet user-defined requirements, such as body straightening and blastema detection.