Installation¶

Our tools should be installed on a Linux/Windows system with Python3.8+.

Development Mode¶

We strongly recommend your installation executed in an isolated conda environment, so firstly run:

conda create --name 4d-bioreconx python=3.8 # The env name could be set arbitrarily.

Then get into the environment you build:

conda activate 4d-bioreconx

Use the latest version of dev branch on Github, you need to clone the repository and enter the directory:

git clone -b dev https://github.com/BGI-Qingdao/4D-BioReconX.git

cd 4D-BioReconX

Install each module of interest via following its own instructions

Possible installation failed due to some factors:

Version of Python

Make sure you are working on Python3.8.

Conflicts of dependencies

Find out packages that lead to failures, then create a new requirements.txt of them and run:

pip install -r requirements.txt

conda create --name 4d-bioreconx python=3.8

conda activate 4d-bioreconx

Use the installation command with conda:

Coming soon...