Mesh generation pipeline¶
meshgen pipeline aims to generate 3D mesh models
workflow¶
usage¶
gen stacked tif¶
python3 gen_stacked_tif.py
argument |
description |
|---|---|
-i |
mask.lst |
-a |
anno.txt |
-o |
output prefix |
-b |
binsize default 20 |
mask.lst example¶
the first column is the z value ( must start from 0 ), and the second column is cellbin mask file
0 s0.mask
1 s1.mask
…
n sn.mask
anno.txt example¶
slice_id,cell_id,anno_id
1,11,1
2,12,2
the slice id starts from 1
reset obj¶
python3 reset_obj.py
argument |
description |
|---|---|
-i |
in.obj |
-o |
output prefix |
-b |
binsize default 20 |